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Oss projects by domain: Difference between revisions
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* '''Neuroscience'''
** Projects
*** [http://neuro.debian.net/ NeuroDebian] - a turnkey Linux distribution with major open source neuroimaging packages included
**** Comments & Testimonials:
*** [http://neurosynth.org/ Neurosynth] - an online platform to perform meta-analyses on neuroimaging studies
**** Comments & Testimonials:
*** [http://afni.nimh.nih.gov/afni/ AFNI] - software for performing neuroimaging analyses maintained by the NIH
**** Comments & Testimonials:
*** [http://www.fil.ion.ucl.ac.uk/spm/software/ SPM] - software for doing statistical parametric mapping analysis
**** Comments & Testimonials:
*** [http://stnava.github.io/ANTs/ ANTs] - software to put individual fMRI scans in a common space that can be compared across subjects
**** Comments & Testimonials:
*** [http://nipy.sourceforge.net/nipype/ Nipype] - a common Python interface to a variety of neuroimaging packages
**** Comments & Testimonials:
*** [http://nipy.sourceforge.net/nibabel/ Nibabel] - a Python package to load in neuroimaging data files
**** Comments & Testimonials:
*** [http://fcp-indi.github.io/ C-PAC] - a Python package to configure resting state fMRI analyses
**** Comments & Testimonials:
*** [http://www.gnu.org/software/octave/ Octave] - an open source version of Matlab; many Matlabpbased neuroimaging packages could work with Octave with some extra development
**** Comments & Testimonials:
*** [https://github.com/BackyardBrains/Backyard-Brains-Android-App#readme Backyard Brains]
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**** Comments & Testimonials:
***** Very friendly, active maintainers but difficult setup process, especially for Windows.
*** [https://pythonhosted.org/pyxnat/ PyXNAT] - allows Python to interface with a popular neuroimaging data management tool
**** Comments & Testimonials:
*** [https://github.com/openworm/PyOpenWorm PyOpenWorm] - Python interface to fetch C. elegans data.
**** Comments & Testimonials:
*** R (see Biochemistry)
*** BioSig (see Biomedical Engineering)
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